J4_8UU9_002
3D structure
- PDB id
- 8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAAG*CGCC*GAC*GGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UU9_002 not in the Motif Atlas
- Homologous match to J4_7A0S_002
- Geometric discrepancy: 0.1162
- The information below is about J4_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8UU9|1|A|U|339
8UU9|1|A|G|340
8UU9|1|A|A|341
8UU9|1|A|A|342
8UU9|1|A|G|343
*
8UU9|1|A|C|359
8UU9|1|A|G|360
8UU9|1|A|C|361
8UU9|1|A|C|362
*
8UU9|1|A|G|366
8UU9|1|A|A|367
8UU9|1|A|C|368
*
8UU9|1|A|G|380
8UU9|1|A|G|381
8UU9|1|A|U|382
8UU9|1|A|A|383
8UU9|1|A|G|384
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain W
- Large ribosomal subunit protein uL24
Coloring options: