J4_8UU9_006
3D structure
- PDB id
- 8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UC*GGUUAG*CC*GCCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 8UU9|1|A|U|1385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UU9_006 not in the Motif Atlas
- Homologous match to J4_4WF9_006
- Geometric discrepancy: 0.0967
- The information below is about J4_4WF9_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UU9|1|A|U|1357
8UU9|1|A|C|1358
*
8UU9|1|A|G|1382
8UU9|1|A|G|1383
8UU9|1|A|U|1384
8UU9|1|A|U|1385
8UU9|1|A|A|1386
8UU9|1|A|G|1387
*
8UU9|1|A|C|1448
8UU9|1|A|C|1449
*
8UU9|1|A|G|1646
8UU9|1|A|C|1647
8UU9|1|A|C|1648
8UU9|1|A|C|1649
8UU9|1|A|G|1650
8UU9|1|A|U|1651
8UU9|1|A|A|1652
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain V
- Large ribosomal subunit protein uL23
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