J4_8UVR_027

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

8UVR|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UVR_027 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0648

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8UVR|1|2a|G|115
8UVR|1|2a|A|116
8UVR|1|2a|G|117
8UVR|1|2a|U|118
8UVR|1|2a|A|119
8UVR|1|2a|A|120
8UVR|1|2a|C|121
8UVR|1|2a|G|122
*
8UVR|1|2a|U|239
8UVR|1|2a|C|240
*
8UVR|1|2a|G|286
8UVR|1|2a|U|287
8UVR|1|2a|A|288
8UVR|1|2a|G|289
*
8UVR|1|2a|C|311
8UVR|1|2a|C|312

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17