J4_8UX8_014

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

8UX8|1|2|C|576, 8UX8|1|2|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UX8_014 not in the Motif Atlas

Homologous match to J4_8B0X_003

Geometric discrepancy: 0.075

The information below is about J4_8B0X_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.3

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8UX8|1|2|G|575
8UX8|1|2|C|576
8UX8|1|2|G|577
*
8UX8|1|2|C|764
8UX8|1|2|G|765
8UX8|1|2|A|766
8UX8|1|2|A|767
8UX8|1|2|A|768
8UX8|1|2|G|769
*
8UX8|1|2|C|810
8UX8|1|2|C|811
8UX8|1|2|G|812
8UX8|1|2|U|813
8UX8|1|2|A|814
8UX8|1|2|A|815
8UX8|1|2|A|816
8UX8|1|2|C|817
8UX8|1|2|G|818
8UX8|1|2|A|819
8UX8|1|2|U|820
8UX8|1|2|G|821
*
8UX8|1|2|C|879
8UX8|1|2|C|880

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain m

Small ribosomal subunit protein uS8

Chain q

Small ribosomal subunit protein uS12

Chain t

Small ribosomal subunit protein uS15

Chain v

Small ribosomal subunit protein uS17

Chain z

30S ribosomal protein S21