J4_8UXA_008

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUAAUUU*AU*AUAA*UC

Length

17 nucleotides

Bulged bases

8UXA|1|AL|U|121, 8UXA|1|AL|U|122

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UXA_008 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.1957

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8UXA|1|AL|G|115
8UXA|1|AL|A|116
8UXA|1|AL|G|117
8UXA|1|AL|U|118
8UXA|1|AL|A|119
8UXA|1|AL|A|120
8UXA|1|AL|U|121
8UXA|1|AL|U|122
8UXA|1|AL|U|123
*
8UXA|1|AL|A|243
8UXA|1|AL|U|244
*
8UXA|1|AL|A|291
8UXA|1|AL|U|292
8UXA|1|AL|A|293
8UXA|1|AL|A|294
*
8UXA|1|AL|U|317
8UXA|1|AL|C|318

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain v

Small ribosomal subunit protein bS16m

Chain w

37S ribosomal protein S17, mitochondrial