J4_8V87_003
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8V87|1|1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8V87_003 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.1115
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8V87|1|1|G|1492
8V87|1|1|G|1493
8V87|1|1|U|1494
8V87|1|1|U|1495
8V87|1|1|C|1496
*
8V87|1|1|G|1520
8V87|1|1|G|1521
8V87|1|1|U|1522
8V87|1|1|U|1523
8V87|1|1|A|1524
8V87|1|1|G|1525
*
8V87|1|1|C|1614
8V87|1|1|C|1615
*
8V87|1|1|G|1829
8V87|1|1|G|1830
8V87|1|1|U|1831
8V87|1|1|C|1832
8V87|1|1|G|1833
8V87|1|1|U|1834
8V87|1|1|A|1835
8V87|1|1|C|1836
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- 60S ribosomal protein L19-A
- Chain X
- 60S ribosomal protein L25
- Chain g
- 60S ribosomal protein L34-A
- Chain j
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L38
- Chain n
- Pescadillo homolog
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