3D structure

PDB id
8V9K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUG*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
8V9K|1|A|U|2195
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8V9K_008 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.1135
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_42306.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
5

Unit IDs

8V9K|1|A|C|2050
8V9K|1|A|U|2051
8V9K|1|A|G|2052
*
8V9K|1|A|C|2129
8V9K|1|A|G|2130
*
8V9K|1|A|C|2148
8V9K|1|A|C|2149
8V9K|1|A|U|2150
8V9K|1|A|A|2151
8V9K|1|A|A|2152
8V9K|1|A|G|2153
8V9K|1|A|G|2154
8V9K|1|A|U|2155
8V9K|1|A|A|2156
8V9K|1|A|G|2157
*
8V9K|1|A|C|2191
8V9K|1|A|G|2192
8V9K|1|A|A|2193
8V9K|1|A|A|2194
8V9K|1|A|U|2195
8V9K|1|A|G|2196

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain u
30S Ribosomal Protein S22

Coloring options:


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