J4_8V9L_004
3D structure
- PDB id
- 8V9L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGUUC*GGUGAG*CC*GCCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8V9L|1|A|G|1456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8V9L_004 not in the Motif Atlas
- Homologous match to J4_4WF9_005
- Geometric discrepancy: 0.1014
- The information below is about J4_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8V9L|1|A|G|1425
8V9L|1|A|G|1426
8V9L|1|A|U|1427
8V9L|1|A|U|1428
8V9L|1|A|C|1429
*
8V9L|1|A|G|1453
8V9L|1|A|G|1454
8V9L|1|A|U|1455
8V9L|1|A|G|1456
8V9L|1|A|A|1457
8V9L|1|A|G|1458
*
8V9L|1|A|C|1519
8V9L|1|A|C|1520
*
8V9L|1|A|G|1815
8V9L|1|A|C|1816
8V9L|1|A|C|1817
8V9L|1|A|C|1818
8V9L|1|A|G|1819
8V9L|1|A|U|1820
8V9L|1|A|A|1821
8V9L|1|A|C|1822
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain V
- Large ribosomal subunit protein uL23
Coloring options: