J4_8V9L_004

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8V9L|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8V9L_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1014

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8V9L|1|A|G|1425
8V9L|1|A|G|1426
8V9L|1|A|U|1427
8V9L|1|A|U|1428
8V9L|1|A|C|1429
*
8V9L|1|A|G|1453
8V9L|1|A|G|1454
8V9L|1|A|U|1455
8V9L|1|A|G|1456
8V9L|1|A|A|1457
8V9L|1|A|G|1458
*
8V9L|1|A|C|1519
8V9L|1|A|C|1520
*
8V9L|1|A|G|1815
8V9L|1|A|C|1816
8V9L|1|A|C|1817
8V9L|1|A|C|1818
8V9L|1|A|G|1819
8V9L|1|A|U|1820
8V9L|1|A|A|1821
8V9L|1|A|C|1822

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain V

Large ribosomal subunit protein uL23