J4_8V9L_012
3D structure
- PDB id
- 8V9L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUU*AAUACAC*GGAAAG*CGG
- Length
- 19 nucleotides
- Bulged bases
- 8V9L|1|a|C|179, 8V9L|1|a|A|180, 8V9L|1|a|A|211
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8V9L_012 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.4588
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8V9L|1|a|C|139
8V9L|1|a|U|140
8V9L|1|a|U|141
*
8V9L|1|a|A|175
8V9L|1|a|A|176
8V9L|1|a|U|177
8V9L|1|a|A|178
8V9L|1|a|C|179
8V9L|1|a|A|180
8V9L|1|a|C|181
*
8V9L|1|a|G|207
8V9L|1|a|G|208
8V9L|1|a|A|209
8V9L|1|a|A|210
8V9L|1|a|A|211
8V9L|1|a|G|212
*
8V9L|1|a|C|219
8V9L|1|a|G|220
8V9L|1|a|G|221
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain q
- 30S ribosomal protein S17
- Chain t
- 30S ribosomal protein S20
Coloring options: