J4_8VFT_004

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8VFT|1|5|C|216, 8VFT|1|5|C|217, 8VFT|1|5|A|218, 8VFT|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VFT|1|5|C|196
8VFT|1|5|A|197
8VFT|1|5|A|198
8VFT|1|5|G|199
*
8VFT|1|5|C|215
8VFT|1|5|C|216
8VFT|1|5|C|217
8VFT|1|5|A|218
8VFT|1|5|G|219
8VFT|1|5|C|220
8VFT|1|5|C|221
8VFT|1|5|C|222
*
8VFT|1|5|G|226
8VFT|1|5|A|227
8VFT|1|5|C|228
*
8VFT|1|5|G|240
8VFT|1|5|G|241
8VFT|1|5|U|242
8VFT|1|5|A|243
8VFT|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain Y

uL24