J4_8VFT_009
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAA(UY1)G
- Length
- 21 nucleotides
- Bulged bases
- 8VFT|1|5|UY1|3818
- QA status
- Modified nucleotides: UY1
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VFT_009 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1346
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VFT|1|5|C|3696
8VFT|1|5|U|3697
8VFT|1|5|G|3698
*
8VFT|1|5|C|3752
8VFT|1|5|G|3753
*
8VFT|1|5|C|3771
8VFT|1|5|U|3772
8VFT|1|5|U|3773
8VFT|1|5|A|3774
8VFT|1|5|A|3775
8VFT|1|5|G|3776
8VFT|1|5|G|3777
8VFT|1|5|U|3778
8VFT|1|5|A|3779
8VFT|1|5|G|3780
*
8VFT|1|5|U|3814
8VFT|1|5|G|3815
8VFT|1|5|A|3816
8VFT|1|5|A|3817
8VFT|1|5|UY1|3818
8VFT|1|5|G|3819
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- uL2
- Chain n
- eL41
Coloring options: