J4_8VFT_011
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 8VFT|1|5|A|4234
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VFT_011 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1958
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VFT|1|5|C|4231
8VFT|1|5|U|4232
8VFT|1|5|A|4233
8VFT|1|5|A|4234
8VFT|1|5|G|4235
*
8VFT|1|5|U|4289
8VFT|1|5|U|4290
8VFT|1|5|G|4291
8VFT|1|5|A|4292
8VFT|1|5|PSU|4293
*
8VFT|1|5|A|4317
8VFT|1|5|C|4318
8VFT|1|5|C|4319
*
8VFT|1|5|G|4328
8VFT|1|5|G|4329
8VFT|1|5|G|4330
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- uL18
- Chain T
- eL21
- Chain b
- eL29
- Chain o
- eL42
Coloring options: