J4_8VIO_011

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

AACC*GAC*GGACA*UCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VIO_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1578

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8VIO|1|A|A|2867
8VIO|1|A|A|2868
8VIO|1|A|C|2869
8VIO|1|A|C|2870
*
8VIO|1|A|G|2898
8VIO|1|A|A|2899
8VIO|1|A|C|2900
*
8VIO|1|A|G|2955
8VIO|1|A|G|2956
8VIO|1|A|A|2957
8VIO|1|A|C|2958
8VIO|1|A|A|2959
*
8VIO|1|A|U|2993
8VIO|1|A|C|2994
8VIO|1|A|U|2995

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S Ribosomal Protein L13

Chain L

50S ribosomal protein L14