J4_8VK7_001

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CUAAAC*GGGUUG*CUG*UAAG

Length

19 nucleotides

Bulged bases

8VK7|1|A|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VK7|1|A|C|269
8VK7|1|A|U|270
8VK7|1|A|A|271
8VK7|1|A|A|272
8VK7|1|A|A|273
8VK7|1|A|C|274
*
8VK7|1|A|G|312
8VK7|1|A|G|313
8VK7|1|A|G|314
8VK7|1|A|U|315
8VK7|1|A|U|316
8VK7|1|A|G|317
*
8VK7|1|A|C|492
8VK7|1|A|U|493
8VK7|1|A|G|494
*
8VK7|1|A|U|509
8VK7|1|A|A|510
8VK7|1|A|A|511
8VK7|1|A|G|512

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9