J4_8VKI_003
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CGAUUAG*CC*GUAC*GG
- Length
- 15 nucleotides
- Bulged bases
- 8VKI|1|A|G|1386, 8VKI|1|A|U|1389, 8VKI|1|A|U|1864, 8VKI|1|A|A|1865
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VKI_003 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.5714
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8VKI|1|A|C|1385
8VKI|1|A|G|1386
8VKI|1|A|A|1387
8VKI|1|A|U|1388
8VKI|1|A|U|1389
8VKI|1|A|A|1390
8VKI|1|A|G|1391
*
8VKI|1|A|C|1409
8VKI|1|A|C|1410
*
8VKI|1|A|G|1863
8VKI|1|A|U|1864
8VKI|1|A|A|1865
8VKI|1|A|C|1866
*
8VKI|1|A|G|2233
8VKI|1|A|G|2234
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain O
- 50S ribosomal protein L17
- Chain T
- 50S Ribosomal Protein L22
- Chain b
- 50S ribosomal protein L32
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