J4_8VKV_003

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8VKV|1|D|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|D|G|115
8VKV|1|D|A|116
8VKV|1|D|G|117
8VKV|1|D|U|118
8VKV|1|D|A|119
8VKV|1|D|A|120
8VKV|1|D|U|121
8VKV|1|D|G|122
*
8VKV|1|D|U|239
8VKV|1|D|G|240
*
8VKV|1|D|C|286
8VKV|1|D|U|287
8VKV|1|D|A|288
8VKV|1|D|G|289
*
8VKV|1|D|C|311
8VKV|1|D|C|312

Current chains

Chain D

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17