J4_8VKW_004

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8VKW|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VKW_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1301

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

8VKW|1|A|G|1425
8VKW|1|A|G|1426
8VKW|1|A|U|1427
8VKW|1|A|U|1428
8VKW|1|A|C|1429
*
8VKW|1|A|G|1453
8VKW|1|A|G|1454
8VKW|1|A|U|1455
8VKW|1|A|G|1456
8VKW|1|A|A|1457
8VKW|1|A|G|1458
*
8VKW|1|A|C|1519
8VKW|1|A|C|1520
*
8VKW|1|A|G|1815
8VKW|1|A|C|1816
8VKW|1|A|C|1817
8VKW|1|A|C|1818
8VKW|1|A|G|1819
8VKW|1|A|U|1820
8VKW|1|A|A|1821
8VKW|1|A|C|1822

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23

Chain d

50S ribosomal protein L34