J4_8VL1_005
3D structure
- PDB id
- 8VL1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8VL1|1|D|C|576, 8VL1|1|D|A|815, 8VL1|1|D|C|817, 8VL1|1|D|A|819
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VL1|1|D|G|575
8VL1|1|D|C|576
8VL1|1|D|G|577
*
8VL1|1|D|C|764
8VL1|1|D|G|765
8VL1|1|D|A|766
8VL1|1|D|A|767
8VL1|1|D|A|768
8VL1|1|D|G|769
*
8VL1|1|D|C|810
8VL1|1|D|C|811
8VL1|1|D|G|812
8VL1|1|D|U|813
8VL1|1|D|A|814
8VL1|1|D|A|815
8VL1|1|D|A|816
8VL1|1|D|C|817
8VL1|1|D|G|818
8VL1|1|D|A|819
8VL1|1|D|U|820
8VL1|1|D|G|821
*
8VL1|1|D|C|879
8VL1|1|D|C|880
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S21
- Chain N
- 30S ribosomal protein S8
- Chain R
- 30S ribosomal protein S12
- Chain T
- Small ribosomal subunit protein uS15
- Chain V
- 30S ribosomal protein S17
Coloring options: