J4_8VL1_008

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8VL1|1|a|U|653, 8VL1|1|a|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VL1|1|a|C|601
8VL1|1|a|A|602
8VL1|1|a|A|603
8VL1|1|a|G|604
*
8VL1|1|a|C|624
8VL1|1|a|G|625
8VL1|1|a|A|626
8VL1|1|a|A|627
8VL1|1|a|G|628
*
8VL1|1|a|C|635
8VL1|1|a|G|636
8VL1|1|a|A|637
8VL1|1|a|G|638
*
8VL1|1|a|C|650
8VL1|1|a|G|651
8VL1|1|a|U|652
8VL1|1|a|U|653
8VL1|1|a|A|654
8VL1|1|a|A|655
8VL1|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L4

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15