J4_8VL1_009

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8VL1|1|a|G|1271, 8VL1|1|a|A|1272, 8VL1|1|a|U|1273, 8VL1|1|a|U|1647

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VL1|1|a|C|1270
8VL1|1|a|G|1271
8VL1|1|a|A|1272
8VL1|1|a|U|1273
8VL1|1|a|A|1274
8VL1|1|a|A|1275
8VL1|1|a|A|1276
*
8VL1|1|a|U|1294
8VL1|1|a|C|1295
*
8VL1|1|a|G|1645
8VL1|1|a|C|1646
8VL1|1|a|U|1647
8VL1|1|a|U|1648
*
8VL1|1|a|A|2009
8VL1|1|a|G|2010

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain w

50S ribosomal protein L17