J4_8VM9_001

3D structure

PDB id

8VM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of rhinovirus B14 RNA replication element sD-loop mutant in complex with Fab BL3-6

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

GC*GA*UG*CC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VM9_001 not in the Motif Atlas

Homologous match to J4_8VM9_002

Geometric discrepancy: 0.2941

The information below is about J4_8VM9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_00691.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

12

Unit IDs

8VM9|1|C|G|8
8VM9|1|C|C|9
*
8VM9|1|C|G|30
8VM9|1|C|A|31
*
8VM9|1|C|U|41
8VM9|1|C|G|42
*
8VM9|1|C|C|77
8VM9|1|C|C|78

Current chains

Chain C

RNA (85-MER)

Nearby chains

Chain H

Heavy Chain of Fab BL3-6