J4_8VMA_002

3D structure

PDB id

8VMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of rhinovirus C15 RNA replication element sD-loop mutant in complex with Fab BL3-6

Experimental method

X-RAY DIFFRACTION

Resolution

2.54 Å

Loop

Sequence

GG*CA*UG*CC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VMA_002 not in the Motif Atlas

Homologous match to J4_8VMA_001

Geometric discrepancy: 0.1305

The information below is about J4_8VMA_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_00691.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

8VMA|1|R|G|8
8VMA|1|R|G|9
*
8VMA|1|R|C|33
8VMA|1|R|A|34
*
8VMA|1|R|U|44
8VMA|1|R|G|45
*
8VMA|1|R|C|80
8VMA|1|R|C|81

Current chains

Chain R

RNA (88-MER)

Nearby chains

Chain A

Heavy Chain of Fab BL3-6