J4_8VOO_004

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8VOO|1|D|C|183, 8VOO|1|D|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOO|1|D|G|142
8VOO|1|D|A|143
8VOO|1|D|G|144
*
8VOO|1|D|C|178
8VOO|1|D|A|179
8VOO|1|D|U|180
8VOO|1|D|A|181
8VOO|1|D|A|182
8VOO|1|D|C|183
8VOO|1|D|G|184
*
8VOO|1|D|C|193
8VOO|1|D|C|194
8VOO|1|D|A|195
8VOO|1|D|A|196
8VOO|1|D|A|197
8VOO|1|D|G|198
*
8VOO|1|D|U|219
8VOO|1|D|G|220
8VOO|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20