J4_8VOO_005

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

8VOO|1|D|C|576, 8VOO|1|D|A|815, 8VOO|1|D|C|817, 8VOO|1|D|A|819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOO|1|D|G|575
8VOO|1|D|C|576
8VOO|1|D|G|577
*
8VOO|1|D|C|764
8VOO|1|D|G|765
8VOO|1|D|A|766
8VOO|1|D|A|767
8VOO|1|D|A|768
8VOO|1|D|G|769
*
8VOO|1|D|C|810
8VOO|1|D|C|811
8VOO|1|D|G|812
8VOO|1|D|U|813
8VOO|1|D|A|814
8VOO|1|D|A|815
8VOO|1|D|A|816
8VOO|1|D|C|817
8VOO|1|D|G|818
8VOO|1|D|A|819
8VOO|1|D|U|820
8VOO|1|D|G|821
*
8VOO|1|D|C|879
8VOO|1|D|C|880

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain N

30S ribosomal protein S8

Chain R

30S ribosomal protein S12

Chain T

Small ribosomal subunit protein uS15

Chain V

30S ribosomal protein S17