J4_8VOQ_004

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8VOQ|1|D|C|183, 8VOQ|1|D|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOQ|1|D|G|142
8VOQ|1|D|A|143
8VOQ|1|D|G|144
*
8VOQ|1|D|C|178
8VOQ|1|D|A|179
8VOQ|1|D|U|180
8VOQ|1|D|A|181
8VOQ|1|D|A|182
8VOQ|1|D|C|183
8VOQ|1|D|G|184
*
8VOQ|1|D|C|193
8VOQ|1|D|C|194
8VOQ|1|D|A|195
8VOQ|1|D|A|196
8VOQ|1|D|A|197
8VOQ|1|D|G|198
*
8VOQ|1|D|U|219
8VOQ|1|D|G|220
8VOQ|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20