J4_8VOQ_005

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

8VOQ|1|D|C|576, 8VOQ|1|D|A|815, 8VOQ|1|D|C|817, 8VOQ|1|D|A|819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOQ|1|D|G|575
8VOQ|1|D|C|576
8VOQ|1|D|G|577
*
8VOQ|1|D|C|764
8VOQ|1|D|G|765
8VOQ|1|D|A|766
8VOQ|1|D|A|767
8VOQ|1|D|A|768
8VOQ|1|D|G|769
*
8VOQ|1|D|C|810
8VOQ|1|D|C|811
8VOQ|1|D|G|812
8VOQ|1|D|U|813
8VOQ|1|D|A|814
8VOQ|1|D|A|815
8VOQ|1|D|A|816
8VOQ|1|D|C|817
8VOQ|1|D|G|818
8VOQ|1|D|A|819
8VOQ|1|D|U|820
8VOQ|1|D|G|821
*
8VOQ|1|D|C|879
8VOQ|1|D|C|880

Current chains

Chain D

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S8

Chain R

30S ribosomal protein S12

Chain T

Small ribosomal subunit protein uS15

Chain V

30S ribosomal protein S17