J4_8VOQ_006

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8VOQ|1|a|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOQ|1|a|C|268
8VOQ|1|a|C|269
*
8VOQ|1|a|G|370
8VOQ|1|a|A|371
8VOQ|1|a|G|372
8VOQ|1|a|U|373
8VOQ|1|a|A|374
8VOQ|1|a|G|375
*
8VOQ|1|a|U|399
8VOQ|1|a|G|400
8VOQ|1|a|A|401
8VOQ|1|a|A|402
8VOQ|1|a|U|403
8VOQ|1|a|A|404
8VOQ|1|a|U|405
8VOQ|1|a|G|406
*
8VOQ|1|a|C|421
8VOQ|1|a|A|422
8VOQ|1|a|A|423
8VOQ|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9