3D structure

PDB id
8VOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
8VOR|1|D|C|576, 8VOR|1|D|A|815, 8VOR|1|D|C|817, 8VOR|1|D|A|819
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8VOR|1|D|G|575
8VOR|1|D|C|576
8VOR|1|D|G|577
*
8VOR|1|D|C|764
8VOR|1|D|G|765
8VOR|1|D|A|766
8VOR|1|D|A|767
8VOR|1|D|A|768
8VOR|1|D|G|769
*
8VOR|1|D|C|810
8VOR|1|D|C|811
8VOR|1|D|G|812
8VOR|1|D|U|813
8VOR|1|D|A|814
8VOR|1|D|A|815
8VOR|1|D|A|816
8VOR|1|D|C|817
8VOR|1|D|G|818
8VOR|1|D|A|819
8VOR|1|D|U|820
8VOR|1|D|G|821
*
8VOR|1|D|C|879
8VOR|1|D|C|880

Current chains

Chain D
16S rRNA

Nearby chains

Chain N
30S ribosomal protein S8
Chain R
30S ribosomal protein S12
Chain T
Small ribosomal subunit protein uS15
Chain V
30S ribosomal protein S17

Coloring options:

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