J4_8VOR_009

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8VOR|1|a|G|1271, 8VOR|1|a|A|1272, 8VOR|1|a|U|1273, 8VOR|1|a|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOR|1|a|C|1270
8VOR|1|a|G|1271
8VOR|1|a|A|1272
8VOR|1|a|U|1273
8VOR|1|a|A|1274
8VOR|1|a|A|1275
8VOR|1|a|A|1276
*
8VOR|1|a|U|1294
8VOR|1|a|C|1295
*
8VOR|1|a|G|1645
8VOR|1|a|C|1646
8VOR|1|a|U|1647
8VOR|1|a|U|1648
*
8VOR|1|a|A|2009
8VOR|1|a|G|2010

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain w

50S ribosomal protein L17