J4_8VOR_010

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8VOR|1|a|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOR|1|a|G|1310
8VOR|1|a|G|1311
8VOR|1|a|U|1312
8VOR|1|a|U|1313
8VOR|1|a|C|1314
*
8VOR|1|a|G|1338
8VOR|1|a|G|1339
8VOR|1|a|U|1340
8VOR|1|a|G|1341
8VOR|1|a|A|1342
8VOR|1|a|G|1343
*
8VOR|1|a|C|1404
8VOR|1|a|U|1405
*
8VOR|1|a|A|1597
8VOR|1|a|A|1598
8VOR|1|a|U|1599
8VOR|1|a|C|1600
8VOR|1|a|G|1601
8VOR|1|a|U|1602
8VOR|1|a|A|1603
8VOR|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23

Chain m

50S ribosomal protein L34