J4_8VOR_013

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOR|1|a|A|1772
8VOR|1|a|A|1773
8VOR|1|a|C|1774
8VOR|1|a|U|1775
8VOR|1|a|G|1776
*
8VOR|1|a|C|1788
8VOR|1|a|A|1789
8VOR|1|a|C|1790
8VOR|1|a|A|1791
8VOR|1|a|G|1792
*
8VOR|1|a|U|1827
8VOR|1|a|G|1828
8VOR|1|a|A|1829
8VOR|1|a|C|1830
*
8VOR|1|a|G|1975
8VOR|1|a|U|1976
8VOR|1|a|A|1977
8VOR|1|a|A|1978
8VOR|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2