J4_8VOR_015

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOR|1|a|G|2643
8VOR|1|a|G|2644
8VOR|1|a|G|2645
8VOR|1|a|C|2646
*
8VOR|1|a|G|2674
8VOR|1|a|A|2675
8VOR|1|a|C|2676
*
8VOR|1|a|G|2731
8VOR|1|a|G|2732
8VOR|1|a|A|2733
8VOR|1|a|A|2734
8VOR|1|a|G|2735
*
8VOR|1|a|U|2769
8VOR|1|a|G|2770
8VOR|1|a|C|2771

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain t

50S ribosomal protein L14