J4_8VOS_004

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8VOS|1|D|C|183, 8VOS|1|D|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOS|1|D|G|142
8VOS|1|D|A|143
8VOS|1|D|G|144
*
8VOS|1|D|C|178
8VOS|1|D|A|179
8VOS|1|D|U|180
8VOS|1|D|A|181
8VOS|1|D|A|182
8VOS|1|D|C|183
8VOS|1|D|G|184
*
8VOS|1|D|C|193
8VOS|1|D|C|194
8VOS|1|D|A|195
8VOS|1|D|A|196
8VOS|1|D|A|197
8VOS|1|D|G|198
*
8VOS|1|D|U|219
8VOS|1|D|G|220
8VOS|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein bS20