J4_8VOS_005

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

8VOS|1|D|C|576, 8VOS|1|D|A|815, 8VOS|1|D|C|817, 8VOS|1|D|A|819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOS|1|D|G|575
8VOS|1|D|C|576
8VOS|1|D|G|577
*
8VOS|1|D|C|764
8VOS|1|D|G|765
8VOS|1|D|A|766
8VOS|1|D|A|767
8VOS|1|D|A|768
8VOS|1|D|G|769
*
8VOS|1|D|C|810
8VOS|1|D|C|811
8VOS|1|D|G|812
8VOS|1|D|U|813
8VOS|1|D|A|814
8VOS|1|D|A|815
8VOS|1|D|A|816
8VOS|1|D|C|817
8VOS|1|D|G|818
8VOS|1|D|A|819
8VOS|1|D|U|820
8VOS|1|D|G|821
*
8VOS|1|D|C|879
8VOS|1|D|C|880

Current chains

Chain D

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS8

Chain R

30S ribosomal protein S12

Chain T

Small ribosomal subunit protein uS15

Chain V

Small ribosomal subunit protein uS17