J4_8VOS_006

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8VOS|1|a|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOS|1|a|C|268
8VOS|1|a|C|269
*
8VOS|1|a|G|370
8VOS|1|a|A|371
8VOS|1|a|G|372
8VOS|1|a|U|373
8VOS|1|a|A|374
8VOS|1|a|G|375
*
8VOS|1|a|U|399
8VOS|1|a|G|400
8VOS|1|a|A|401
8VOS|1|a|A|402
8VOS|1|a|U|403
8VOS|1|a|A|404
8VOS|1|a|U|405
8VOS|1|a|G|406
*
8VOS|1|a|C|421
8VOS|1|a|A|422
8VOS|1|a|A|423
8VOS|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

Large ribosomal subunit protein bL9