J4_8VOS_008

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8VOS|1|a|U|653, 8VOS|1|a|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOS|1|a|C|601
8VOS|1|a|A|602
8VOS|1|a|A|603
8VOS|1|a|G|604
*
8VOS|1|a|C|624
8VOS|1|a|G|625
8VOS|1|a|A|626
8VOS|1|a|A|627
8VOS|1|a|G|628
*
8VOS|1|a|C|635
8VOS|1|a|G|636
8VOS|1|a|A|637
8VOS|1|a|G|638
*
8VOS|1|a|C|650
8VOS|1|a|G|651
8VOS|1|a|U|652
8VOS|1|a|U|653
8VOS|1|a|A|654
8VOS|1|a|A|655
8VOS|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

Large ribosomal subunit protein uL4

Chain o

50S ribosomal protein L35

Chain u

Large ribosomal subunit protein uL15