J4_8VPK_002

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGAUUAG*CC*GUAC*GG

Length

15 nucleotides

Bulged bases

8VPK|1|A|G|1386, 8VPK|1|A|U|1389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VPK_002 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.5792

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8VPK|1|A|C|1385
8VPK|1|A|G|1386
8VPK|1|A|A|1387
8VPK|1|A|U|1388
8VPK|1|A|U|1389
8VPK|1|A|A|1390
8VPK|1|A|G|1391
*
8VPK|1|A|C|1409
8VPK|1|A|C|1410
*
8VPK|1|A|G|1863
8VPK|1|A|U|1864
8VPK|1|A|A|1865
8VPK|1|A|C|1866
*
8VPK|1|A|G|2233
8VPK|1|A|G|2234

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S Ribosomal Protein L22

Chain b

50S ribosomal protein L32