J4_8VPK_008
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AACC*GAC*GGACA*UCU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VPK_008 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.1074
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8VPK|1|A|A|2867
8VPK|1|A|A|2868
8VPK|1|A|C|2869
8VPK|1|A|C|2870
*
8VPK|1|A|G|2898
8VPK|1|A|A|2899
8VPK|1|A|C|2900
*
8VPK|1|A|G|2955
8VPK|1|A|G|2956
8VPK|1|A|A|2957
8VPK|1|A|C|2958
8VPK|1|A|A|2959
*
8VPK|1|A|U|2993
8VPK|1|A|C|2994
8VPK|1|A|U|2995
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S Ribosomal Protein L13
- Chain L
- 50S ribosomal protein L14
Coloring options: