J4_8VS9_003
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8VS9|1|16S|C|576, 8VS9|1|16S|A|815, 8VS9|1|16S|G|818, 8VS9|1|16S|U|820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VS9_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.104
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8VS9|1|16S|G|575
8VS9|1|16S|C|576
8VS9|1|16S|G|577
*
8VS9|1|16S|C|764
8VS9|1|16S|G|765
8VS9|1|16S|A|766
8VS9|1|16S|A|767
8VS9|1|16S|A|768
8VS9|1|16S|G|769
*
8VS9|1|16S|C|810
8VS9|1|16S|C|811
8VS9|1|16S|G|812
8VS9|1|16S|U|813
8VS9|1|16S|A|814
8VS9|1|16S|A|815
8VS9|1|16S|A|816
8VS9|1|16S|C|817
8VS9|1|16S|G|818
8VS9|1|16S|A|819
8VS9|1|16S|U|820
8VS9|1|16S|G|821
*
8VS9|1|16S|C|879
8VS9|1|16S|C|880
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain S08
- 30S ribosomal protein S8
- Chain S12
- 30S ribosomal protein S12
- Chain S15
- Small ribosomal subunit protein uS15
- Chain S17
- Small ribosomal subunit protein uS17
- Chain S21
- 30S ribosomal protein S21
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