J4_8VS9_005

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8VS9|1|23S|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VS9_005 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1925

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8VS9|1|23S|C|601
8VS9|1|23S|A|602
8VS9|1|23S|A|603
8VS9|1|23S|G|604
*
8VS9|1|23S|C|624
8VS9|1|23S|G|625
8VS9|1|23S|A|626
8VS9|1|23S|A|627
8VS9|1|23S|G|628
*
8VS9|1|23S|C|635
8VS9|1|23S|G|636
8VS9|1|23S|A|637
8VS9|1|23S|G|638
*
8VS9|1|23S|C|650
8VS9|1|23S|G|651
8VS9|1|23S|U|652
8VS9|1|23S|U|653
8VS9|1|23S|A|654
8VS9|1|23S|A|655
8VS9|1|23S|G|656

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L04

50S ribosomal protein L4

Chain L15

50S ribosomal protein L15

Chain L35

50S ribosomal protein L35