J4_8VS9_014
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUAG*CGC*GAGGUCU*AU
- Length
- 16 nucleotides
- Bulged bases
- 8VS9|1|ATRN|U|8, 8VS9|1|ATRN|U|47, 8VS9|1|ATRN|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VS9_014 not in the Motif Atlas
- Homologous match to J4_7YSE_001
- Geometric discrepancy: 0.2476
- The information below is about J4_7YSE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.27
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 53
Unit IDs
8VS9|1|ATRN|A|7
8VS9|1|ATRN|U|8
8VS9|1|ATRN|A|9
8VS9|1|ATRN|G|10
*
8VS9|1|ATRN|C|25
8VS9|1|ATRN|G|26
8VS9|1|ATRN|C|27
*
8VS9|1|ATRN|G|43
8VS9|1|ATRN|A|44
8VS9|1|ATRN|G|45
8VS9|1|ATRN|G|46
8VS9|1|ATRN|U|47
8VS9|1|ATRN|C|48
8VS9|1|ATRN|U|49
*
8VS9|1|ATRN|A|65
8VS9|1|ATRN|U|66
Current chains
- Chain ATRN
- A-tRNA
Nearby chains
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: