3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AUAG*CGC*GAGGUCU*AU
Length
16 nucleotides
Bulged bases
8VS9|1|ATRN|U|8, 8VS9|1|ATRN|U|47, 8VS9|1|ATRN|C|48
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8VS9_014 not in the Motif Atlas
Homologous match to J4_7YSE_001
Geometric discrepancy: 0.2476
The information below is about J4_7YSE_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_70449.27
Basepair signature
cWW-F-cWW-cWW-cHS-F-cWW-cWW
Number of instances in this motif group
53

Unit IDs

8VS9|1|ATRN|A|7
8VS9|1|ATRN|U|8
8VS9|1|ATRN|A|9
8VS9|1|ATRN|G|10
*
8VS9|1|ATRN|C|25
8VS9|1|ATRN|G|26
8VS9|1|ATRN|C|27
*
8VS9|1|ATRN|G|43
8VS9|1|ATRN|A|44
8VS9|1|ATRN|G|45
8VS9|1|ATRN|G|46
8VS9|1|ATRN|U|47
8VS9|1|ATRN|C|48
8VS9|1|ATRN|U|49
*
8VS9|1|ATRN|A|65
8VS9|1|ATRN|U|66

Current chains

Chain ATRN
A-tRNA

Nearby chains

Chain 23S
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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