J4_8VSA_002

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8VSA|1|16S|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VSA_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2331

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8VSA|1|16S|G|142
8VSA|1|16S|A|143
8VSA|1|16S|G|144
*
8VSA|1|16S|C|178
8VSA|1|16S|A|179
8VSA|1|16S|U|180
8VSA|1|16S|A|181
8VSA|1|16S|A|182
8VSA|1|16S|C|183
8VSA|1|16S|G|184
*
8VSA|1|16S|C|193
8VSA|1|16S|C|194
8VSA|1|16S|A|195
8VSA|1|16S|A|196
8VSA|1|16S|A|197
8VSA|1|16S|G|198
*
8VSA|1|16S|U|219
8VSA|1|16S|G|220
8VSA|1|16S|C|221

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S20

30S ribosomal protein S20