J4_8VSA_004

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8VSA|1|23S|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VSA_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.167

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8VSA|1|23S|C|268
8VSA|1|23S|C|269
*
8VSA|1|23S|G|370
8VSA|1|23S|A|371
8VSA|1|23S|G|372
8VSA|1|23S|U|373
8VSA|1|23S|A|374
8VSA|1|23S|G|375
*
8VSA|1|23S|U|399
8VSA|1|23S|G|400
8VSA|1|23S|A|401
8VSA|1|23S|A|402
8VSA|1|23S|U|403
8VSA|1|23S|A|404
8VSA|1|23S|U|405
8VSA|1|23S|G|406
*
8VSA|1|23S|C|421
8VSA|1|23S|A|422
8VSA|1|23S|A|423
8VSA|1|23S|G|424

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L09

Large ribosomal subunit protein bL9

Chain L28

50S ribosomal protein L28