J4_8VSA_008

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8VSA|1|23S|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VSA_008 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1041

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8VSA|1|23S|U|1313
8VSA|1|23S|C|1314
*
8VSA|1|23S|G|1338
8VSA|1|23S|G|1339
8VSA|1|23S|U|1340
8VSA|1|23S|G|1341
8VSA|1|23S|A|1342
8VSA|1|23S|G|1343
*
8VSA|1|23S|C|1404
8VSA|1|23S|U|1405
*
8VSA|1|23S|A|1597
8VSA|1|23S|A|1598
8VSA|1|23S|U|1599
8VSA|1|23S|C|1600
8VSA|1|23S|G|1601
8VSA|1|23S|U|1602
8VSA|1|23S|A|1603

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L23

50S ribosomal protein L23

Chain L34

50S ribosomal protein L34