J4_8VTU_020

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

8VTU|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTU_020 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0574

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8VTU|1|2A|G|1310
8VTU|1|2A|G|1311
8VTU|1|2A|U|1312
8VTU|1|2A|U|1313
8VTU|1|2A|C|1314
*
8VTU|1|2A|G|1338
8VTU|1|2A|G|1339
8VTU|1|2A|U|1340
8VTU|1|2A|U|1341
8VTU|1|2A|A|1342
8VTU|1|2A|G|1343
*
8VTU|1|2A|C|1404
8VTU|1|2A|U|1405
*
8VTU|1|2A|A|1597
8VTU|1|2A|C|1598
8VTU|1|2A|C|1599
8VTU|1|2A|C|1600
8VTU|1|2A|G|1601
8VTU|1|2A|U|1602
8VTU|1|2A|A|1603
8VTU|1|2A|C|1604

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23