J4_8VTU_029

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

8VTU|1|2a|G|576, 8VTU|1|2a|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTU_029 not in the Motif Atlas

Homologous match to J4_4LFB_003

Geometric discrepancy: 0.0471

The information below is about J4_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

8VTU|1|2a|G|575
8VTU|1|2a|G|576
8VTU|1|2a|G|577
*
8VTU|1|2a|C|764
8VTU|1|2a|G|765
8VTU|1|2a|A|766
8VTU|1|2a|A|767
8VTU|1|2a|A|768
8VTU|1|2a|G|769
*
8VTU|1|2a|C|810
8VTU|1|2a|C|811
8VTU|1|2a|C|812
8VTU|1|2a|U|813
8VTU|1|2a|A|814
8VTU|1|2a|A|815
8VTU|1|2a|A|816
8VTU|1|2a|C|817
8VTU|1|2a|G|818
8VTU|1|2a|A|819
8VTU|1|2a|U|820
8VTU|1|2a|G|821
*
8VTU|1|2a|C|879
8VTU|1|2a|C|880

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2h

30S ribosomal protein S8

Chain 2l

30S ribosomal protein S12

Chain 2o

30S ribosomal protein S15

Chain 2q

30S ribosomal protein S17