J4_8VTV_001

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8VTV|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTV_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0633

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8VTV|1|1A|C|268
8VTV|1|1A|U|269
*
8VTV|1|1A|G|370
8VTV|1|1A|A|371
8VTV|1|1A|G|372
8VTV|1|1A|U|373
8VTV|1|1A|A|374
8VTV|1|1A|C|375
*
8VTV|1|1A|G|399
8VTV|1|1A|G|400
8VTV|1|1A|A|401
8VTV|1|1A|A|402
8VTV|1|1A|U|403
8VTV|1|1A|C|404
8VTV|1|1A|U|405
8VTV|1|1A|G|406
*
8VTV|1|1A|U|421
8VTV|1|1A|A|422
8VTV|1|1A|A|423
8VTV|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9