J4_8VTV_004

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

8VTV|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTV_004 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0759

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8VTV|1|1A|G|1310
8VTV|1|1A|G|1311
8VTV|1|1A|U|1312
8VTV|1|1A|U|1313
8VTV|1|1A|C|1314
*
8VTV|1|1A|G|1338
8VTV|1|1A|G|1339
8VTV|1|1A|U|1340
8VTV|1|1A|U|1341
8VTV|1|1A|A|1342
8VTV|1|1A|G|1343
*
8VTV|1|1A|C|1404
8VTV|1|1A|U|1405
*
8VTV|1|1A|A|1597
8VTV|1|1A|C|1598
8VTV|1|1A|C|1599
8VTV|1|1A|C|1600
8VTV|1|1A|G|1601
8VTV|1|1A|U|1602
8VTV|1|1A|A|1603
8VTV|1|1A|C|1604

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23