J4_8VTV_029

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

8VTV|1|2a|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTV_029 not in the Motif Atlas

Homologous match to J4_4LFB_003

Geometric discrepancy: 0.0519

The information below is about J4_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

8VTV|1|2a|G|575
8VTV|1|2a|G|576
8VTV|1|2a|G|577
*
8VTV|1|2a|C|764
8VTV|1|2a|G|765
8VTV|1|2a|A|766
8VTV|1|2a|A|767
8VTV|1|2a|A|768
8VTV|1|2a|G|769
*
8VTV|1|2a|C|810
8VTV|1|2a|C|811
8VTV|1|2a|C|812
8VTV|1|2a|U|813
8VTV|1|2a|A|814
8VTV|1|2a|A|815
8VTV|1|2a|A|816
8VTV|1|2a|C|817
8VTV|1|2a|G|818
8VTV|1|2a|A|819
8VTV|1|2a|U|820
8VTV|1|2a|G|821
*
8VTV|1|2a|C|879
8VTV|1|2a|C|880

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2h

30S ribosomal protein S8

Chain 2l

30S ribosomal protein S12

Chain 2o

30S ribosomal protein S15

Chain 2q

30S ribosomal protein S17