J4_8VTW_008
3D structure
- PDB id
- 8VTW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.35 Å
Loop
- Sequence
- UUG*CG*CCUAAGGUAG*CGAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8VTW|1|1A|A|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64075.3
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
8VTW|1|1A|U|1833
8VTW|1|1A|U|1834
8VTW|1|1A|G|1835
*
8VTW|1|1A|C|1905
8VTW|1|1A|G|1906
*
8VTW|1|1A|C|1924
8VTW|1|1A|C|1925
8VTW|1|1A|U|1926
8VTW|1|1A|A|1927
8VTW|1|1A|A|1928
8VTW|1|1A|G|1929
8VTW|1|1A|G|1930
8VTW|1|1A|U|1931
8VTW|1|1A|A|1932
8VTW|1|1A|G|1933
*
8VTW|1|1A|C|1967
8VTW|1|1A|G|1968
8VTW|1|1A|A|1969
8VTW|1|1A|A|1970
8VTW|1|1A|A|1971
8VTW|1|1A|A|1972
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: